Any chance Polaris can/pipe combo is to tight? Stock is usually best for back pressure, but if it is little to tight for the trail sled, could be perfect for the mountain.
On an older Doo of mine, I had a can that was too tight and it created a incredible bottom response but fade would get worse the more you ran it. Chased clutching to no end, switched can and ran good. It did not show up like some of the cans where you install them and rpm is off right away and going back to stock was a big improvement. Thus why I kept after clutching.
Haven't followed any Axys turbo builds but if the pipe is to tight, they should be picking up tuning issues w/ excess heat and have piston crown issues.